Index

_

__init__() (objects.cell method) (objects.fiber method) (objects.spin method) _add_noise() (in module save) _caclulate_volumes() (in module diffusion) _diffusion_context_manager() (in module diffusion) _diffusion_in_cell() (in module walk_in_cell) _diffusion_in_fiber() (in module walk_in_fiber) _diffusion_in_water() (in module walk_in_water) _find_spin_locations() (in module spin_init_positions) _find_spin_locations_kernel() (in module spin_init_positions) _generate_signals_and_trajectories() (in module save) _get_bundle() (objects.fiber method) _get_bundle_index() (objects.spin method) _get_cell_index() (objects.spin method) _get_center() (objects.cell method) (objects.fiber method) _get_diffusivity() (objects.cell method) (objects.fiber method)

_get_direction() (objects.fiber method) _get_fiber_index() (objects.spin method) _get_position_t1m() (objects.spin method) _get_position_t2p() (objects.spin method) _get_radius() (objects.cell method) (objects.fiber method) _get_water_index() (objects.spin method) _save_data() (in module save) _set_cell_index() (objects.spin method) _set_center() (objects.cell method) _set_diffusivity() (objects.cell method) _set_fiber_bundle() (objects.spin method) _set_fiber_index() (objects.spin method) _set_position_t2p() (objects.spin method) _set_radius() (objects.cell method) _set_water_index() (objects.spin method) _signal() (in module save) _simulate_diffusion() (in module diffusion)

A

add_subparser_args() (tests.cli.CLI method)

affine_transformation() (in module linalg)

C

cell (class in objects)

CLI (class in tests.cli)

D

diffusion module

dL2() (in module linalg)

F

fiber (class in objects)

L

linalg module

M

module diffusion linalg save spin_init_positions

R

run() (tests.cli.CLI method)

Ry() (in module linalg)

S

save module

spin (class in objects) spin_init_positions module

V

validate_args() (tests.cli.CLI method)